\name{probPTreeGivenTTree}
\alias{probPTreeGivenTTree}
\title{Calculate the probability of a phylogenetic tree given a transmission tree}
\usage{
probPTreeGivenTTree(fulltree, neg)
}
\arguments{
  \item{fulltree}{Combined phylogenetic/transmission tree}

  \item{neg}{Within-host coalescent rate}
}
\value{
Probability of phylogeny given transmission tree
}
\description{
Calculate the probability of a phylogenetic tree given a
transmission tree
}

